( (1) | 3 (1) | A (12) | B (8) | C (29) | D (9) | E (4) | F (19) | G (1) | H (3) | I (8) | L (2) | M (4) | N (9) | P (10) | Q (1) | R (15) | S (13) | T (9) | U (5)
Titlesort descending All taxonomy terms application concept flags sampling protocol
Fasta Sequence (Converter)
fasta2seq fasta2seq fasta2seq
fasta2weight fasta2weight fasta2weight
File Converter
File Format
File Format
FileLibrary (Automated Setup)
filter_methyl_cst filter_methyl_cst filter_methyl_cst
filter_noe filter_noe filter_noe
Flags (Abinitio) -abinitio::increase_cycles, -abinitio:recover_low_in_stages, -abinitio:rg_reweight, -abinitio:rsd_wt_helix, -abinitio:rsd_wt_loop, -abinitio:skip_stages, -abinitio:stage1_patch, -abinitio:stage2_patch, -abinitio:stage3a_patch, -abinitio:stage3b_patch, -abinitio:stage4_patch, -constant_seed, -constraint:threshold, -constraints:cst_weight, -database, -fold_cst:no_recover_low_at_constraint_switch, -fold_cst:seq_sep_stages, -fold_cst:skip_on_noviolation_in_stage1, -in:file:native, -jran, -jumps:chainbreak_weight_stage1, -jumps:chainbreak_weight_stage2, -jumps:chainbreak_weight_stage3, -jumps:chainbreak_weight_stage4, -jumps:increase_chainbreak, -jumps:overlap_chainbreak, -jumps:ramp_chainbreaks, -nstruct, -out:path, -run:dry_run, -run:test_cycles, -seed_offset, abinitio, abrelax, ConstraintFragmentSampler, FragmentSampler, minirosetta, -in:file:fasta, -in:file:frag3, -in:file:frag9, -out:file:silent minirosetta -in:file:native, -in:file:fasta, -in:file:frag3, -in:file:frag9, -database, -nstruct, -out:file:silent, -out:path, -abinitio::increase_cycles, -abinitio:rg_reweight, -abinitio:rsd_wt_helix, -abinitio:rsd_wt_loop, -abinitio:stage1_patch, -abinitio:stage2_patch, -abinitio:stage3a_patch, -abinitio:stage3b_patch, -abinitio:stage4_patch, -abinitio:skip_stages, -abinitio:recover_low_in_stages, -constraints:cst_weight, -fold_cst:seq_sep_stages, -fold_cst:skip_on_noviolation_in_stage1, -constraint:threshold, -fold_cst:no_recover_low_at_constraint_switch, -jumps:ramp_chainbreaks, -jumps:increase_chainbreak, -jumps:overlap_chainbreak, -jumps:chainbreak_weight_stage1, -jumps:chainbreak_weight_stage2, -jumps:chainbreak_weight_stage3, -jumps:chainbreak_weight_stage4, -constant_seed, -jran, -seed_offset, -run:dry_run, -run:test_cycles abinitio, abrelax
Flags (AutoNOE) -iterative:auto_assign_scheme, -iterative:cenpool_noesy_cst_weight, -iterative:dcut, -iterative:delay_noesy_reassign, -iterative:initial_noe_auto_assign_csts, -iterative:skip_redundant_constraints -iterative:cenpool_noesy_cst_weight, -iterative:skip_redundant_constraints, -iterative:delay_noesy_reassign, -iterative:initial_noe_auto_assign_csts, -iterative:auto_assign_scheme, -iterative:dcut
Flags (CS-Rosetta)
Flags (RASREC) -iterative:auto_assign_scheme, -iterative:cenpool_chemicalshift_weight, -iterative:cenpool_noesy_cst_weight, -iterative:centroid_before_quickrelax_weight, -iterative:centroid_quickrelax, -iterative:cen_score, -iterative:chemicalshift_column, -iterative:dcut, -iterative:delay_noesy_reassign, -iterative:enumerate:broker, -iterative:enumerate:skip_half, -iterative:fapool_chemicalshift_weight, -iterative:fa_score, -iterative:flags_fullatom, -iterative:force_topology_resampling, -iterative:fullatom, -iterative:fullatom_after_quickrelax_weight, -iterative:initial_beta_topology, -iterative:initial_noe_auto_assign_csts, -iterative:max_nstruct, -iterative:min_diversity, -iterative:mix_frags, -iterative:normalize:sampling, -iterative:recompute_beta_Naccept, -iterative:rmsf_nstruct, -iterative:safety_hatch_scorecut, -iterative:skip_redundant_constraints, -iterative:super_quick_relax_protocol, -out:nstruct, -iterative:accept_ratio, -iterative:cen_score_patch, -iterative:fa_score_patch, -out:file:silent -out:nstruct, -out:file:silent, -iterative:fullatom, -iterative:min_diversity, -iterative:max_nstruct, -iterative:accept_ratio, -iterative:enumerate:broker, -iterative:enumerate:skip_half, -iterative:initial_beta_topology, -iterative:force_topology_resampling, -iterative:recompute_beta_Naccept, -iterative:mix_frags, -iterative:safety_hatch_scorecut, -iterative:cen_score, -iterative:cen_score_patch, -iterative:fa_score, -iterative:fa_score_patch, -iterative:centroid_quickrelax, -iterative:super_quick_relax_protocol, -iterative:centroid_before_quickrelax_weight, -iterative:fullatom_after_quickrelax_weight, -iterative:cenpool_chemicalshift_weight, -iterative:fapool_chemicalshift_weight, -iterative:chemicalshift_column, -iterative:flags_fullatom, -iterative:normalize:sampling, -iterative:rmsf_nstruct, -iterative:cenpool_noesy_cst_weight, -iterative:skip_redundant_constraints, -iterative:delay_noesy_reassign, -iterative:initial_noe_auto_assign_csts, -iterative:auto_assign_scheme, -iterative:dcut
Fragment Assembly (Abinitio) abinitio, abrelax, fragment, fragment assembly, Jump, jumping, vall, fragment_picker fragment_picker fragment, vall, jumping abrelax, abinitio, fragment assembly
Fragment Library fragment library fragment library
Fragment moves -abinitio:frags3, fragment library, FragmentMover, FragmentSet, -abinitio:frags9, -abinitio:frags_large, -abinitio:frags_small, -abinitio:number_3mer_frags, -abinitio:number_9mer_frags fragment library -abinitio:number_9mer_frags, -abinitio:number_3mer_frags, -abinitio:frags_small, -abinitio:frags_large, -abinitio:frags3, -abinitio:frags9
Fragment Picker does not create 9mer fragments CS-Rosetta Toolbox
Fragment Picking with Chemical Shift Data abrelax, bmrb2talos, FragmentPicker, fragments, molecular fragment replacement, pick_fragments, renumber_talos, talos2fasta, rasrec, fragment_picker renumber_talos, bmrb2talos, talos2fasta, pick_fragments, fragment_picker fragments, molecular fragment replacement abrelax, rasrec
Fullatom Model fullatom fullatom