Submitted by olange on Tue, 04/24/2012 - 19:39
Description:
This tool lists all setups in the target-library. One can filter-out setups
using options -method/-methods, -label/-labels and -target/-targets. Use flag
-detail to get the full information of the listed setups. This application
does not change any setup(requires choice of -method) Alias: setup_list.py
Usage:
list_setup.py |
[-h] [-target_dir TARGET_DIR] |
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[-target_prefix TARGET_PREFIX] [-quiet] |
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[-flag_lib FLAG_LIB] [-label LABEL] |
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[-method {abrelax,autoNOE,contacts,cyana,fixbb,rasrec,replica_dock,vanilla_dock}] |
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[-remove [REMOVE [REMOVE ...]]] [-patch PATCH] |
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[-targets [TARGETS [TARGETS ...]]] |
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[-labels [LABELS [LABELS ...]]] |
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[-methods [METHODS [METHODS ...]]] [-details] |
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[-show [SHOW [SHOW ...]]] [-parse] [-fix] [-file FILE] |
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[-exact] |
Detailed Help:
-h, --help |
show this help message and exit |
-target_dir TARGET_DIR |
input-files are used from/put into this path, instead of directly into the run-directory |
-target_prefix TARGET_PREFIX |
target dirs are found here |
-quiet |
suppress output |
-flag_lib FLAG_LIB |
directory with meta files for generation of Rosetta cmd-line flag-files |
-label LABEL |
give a special label to this setup -- reflected in file-name for method-options |
-method {abrelax,autoNOE,contacts,cyana,fixbb,rasrec,replica_dock,vanilla_dock} |
choose algorithm; use together with -h to see additional method-specific options |
-remove [REMOVE [REMOVE ...]] |
remove one or more options from the SETUP |
-patch PATCH |
provide some python code that patches file-library content |
-targets [TARGETS [TARGETS ...]], -target [TARGETS [TARGETS ...]] |
you can filter the display to a subset of targets |
-labels [LABELS [LABELS ...]] |
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-methods [METHODS [METHODS ...]] |
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-details |
show full details of all listed setups (requires option -method) |
-show [SHOW [SHOW ...]] |
show details for selected options in table form (requires option -method) |
-parse |
show output like this xya|eas|alkd |
-fix |
show always all columns |
-file FILE |
get full filename(s) of this entry |
-exact |
only accept exact matches of target |