list_setup

Description:

This tool lists all setups in the target-library. One can filter-out setups
using options -method/-methods, -label/-labels and -target/-targets. Use flag
-detail to get the full information of the listed setups. This application
does not change any setup(requires choice of -method) Alias: setup_list.py

Usage:

list_setup.py [-h] [-target_dir TARGET_DIR]
[-target_prefix TARGET_PREFIX] [-quiet]
[-flag_lib FLAG_LIB] [-label LABEL]
[-method {abrelax,autoNOE,contacts,cyana,fixbb,rasrec,replica_dock,vanilla_dock}]
[-remove [REMOVE [REMOVE ...]]] [-patch PATCH]
[-targets [TARGETS [TARGETS ...]]]
[-labels [LABELS [LABELS ...]]]
[-methods [METHODS [METHODS ...]]] [-details]
[-show [SHOW [SHOW ...]]] [-parse] [-fix] [-file FILE]
[-exact]

Detailed Help:

-h, --help show this help message and exit
-target_dir TARGET_DIR input-files are used from/put into this path, instead of directly into the run-directory
-target_prefix TARGET_PREFIX target dirs are found here
-quiet suppress output
-flag_lib FLAG_LIB directory with meta files for generation of Rosetta cmd-line flag-files
-label LABEL give a special label to this setup -- reflected in file-name for method-options
-method {abrelax,autoNOE,contacts,cyana,fixbb,rasrec,replica_dock,vanilla_dock} choose algorithm; use together with -h to see additional method-specific options
-remove [REMOVE [REMOVE ...]] remove one or more options from the SETUP
-patch PATCH provide some python code that patches file-library content
-targets [TARGETS [TARGETS ...]], -target [TARGETS [TARGETS ...]] you can filter the display to a subset of targets
-labels [LABELS [LABELS ...]]
-methods [METHODS [METHODS ...]]
-details show full details of all listed setups (requires option -method)
-show [SHOW [SHOW ...]] show details for selected options in table form (requires option -method)
-parse show output like this xya|eas|alkd
-fix show always all columns
-file FILE get full filename(s) of this entry
-exact only accept exact matches of target

application: