Submitted by olange on Tue, 04/24/2012 - 19:39
Description:
renumber and remove residues in pdb-file
Usage:
| renumber_pdb.py |
[-h] [-s START] [-e END] [-fasta FASTA | -rigid RIGID] |
| |
[-traceback] |
| |
infile [outfile] |
Detailed Help:
| outfile |
pdb file |
| infile |
pdb file |
| -h, --help |
show this help message and exit |
| -s START, --start START |
starting residue |
| -e END, --end END |
ending residue |
| -fasta FASTA |
figure out trimming from given sequence |
| -rigid RIGID |
use first and last rigid residue from .rigid file as written by pred2rigid |
| -traceback |
print full traceback in case of error |
Examples:
renumber_pdb.py -s 5 -e 25 full.pdb trim.pdb
renumber_pdb.py -fasta new_sequence.fasta full.pdb trim.pdb
renumber_pdb.py -s 5 -e 100 full.pdb > trim.pdb