Submitted by olange on Mon, 05/07/2012 - 10:25
Description:
Installation of CS-Rosetta toolbox
Usage:
| install.py |
[-h] [-notalos] [-nopicking] [-update] [-nocheck] |
| |
[-talos_dir TALOS_DIR] [-rosetta ROSETTA] |
| |
[-rosetta_database ROSETTA_DATABASE] [-blast BLAST] |
| |
[-vall VALL] [-platform {linux,mac}] [-build {default,mpi}] |
| |
[-genomes_db GENOMES_DB] [-blast_platform BLAST_PLATFORM] |
| |
[-target_lib TARGET_LIB] [-talos_version TALOS_VERSION] |
Detailed Help:
| -h, --help |
show this help message and exit |
| -notalos |
do not download NMRPipe (TALOS+) package |
| -nopicking |
suppress installation of frag-picker, this takes a lot of space and is maybe not required (e.g., Laptop/Desktop installation vs. Mainframe installation) |
| -update |
update genome and vall databases if updates available |
| -nocheck |
do not check for availability of updates for genome and vall databases |
| -talos_dir TALOS_DIR |
where to find an existing TALOS+ installation, use this if autodetection fails |
| -rosetta ROSETTA |
path to an existing ROSETTA package |
| -rosetta_database ROSETTA_DATABASE |
path to rosetta_database (only needed if not in same location as rosetta_source |
| -blast BLAST |
specify path to pre-installed BLAST executable. If not given BLAST will be downloaded automatically |
| -vall VALL |
specify path to pre-installed CS-Rosetta VALL |
| -platform {linux,mac} |
specify the platform [linux,mac] |
| -build {default,mpi} |
specify which executables from Rosetta to use [default,mpi] |
| -genomes_db GENOMES_DB |
provide path to genome database, expect to find files nr.00.phd, nr.00.phi, etc. at this location |
| -blast_platform BLAST_PLATFORM |
platform string to select appropriate blast executable when downloading |
| -target_lib TARGET_LIB |
generate target entries at this path, if not absolute path this will be prefixed with $HOME |
| -talos_version TALOS_VERSION |
force talos version (give the year: e.g., 2012 ) |