For structure annotation, we have to run annotate_target and it shows us weak/strong of the structures. This tutorial explaints how to annotate structures calculated by abrelax or rasrec algorthm.
the inputs for this tutorial are the following files:
-type | algorithm type for structure calculation, it should be abrelax or rasrec. |
-pred | the pred.tab file generated by talos+, it contains the cs-consensus of the target. |
-run_folder | directory of the job. |
-bin | directory of Rosetta bin |
-platform | type of computer platform, e.g. linux, macos, etc. |
-comp | type of C++ compiler |
-extras | type of Rosetta command, e.g. default, mpi, static, etc. |
-j | number of processors used for mpi |
annotate_target -type abrelax -pred /home/userA/talos/3cwi/pred.tab -run_folder /home/userA/rasrec/3cwi/standard/run/ -bin /home/userA/rosetta/rosetta_source/bin/ -platform linux -comp gcc -extras mpi -j 10
The command firstly outputs the values of cs-consensus, convergence and energy gap of the structure and then the annotation result, like:
cs-consensus convergence energy gap sum annotation 0.969 0.711 0.974 0.850 strong