renumber residues in rdc file with headers
| renumber_rdc.py | [-h] [-s START] [-e END] [-rosetta] |
| [-fasta FASTA | -rigid RIGID] [-traceback] | |
| infile [outfile] |
| outfile | rdc file |
| infile | rdc file |
| -h, --help | show this help message and exit |
| -s START, --start START | starting residue |
| -e END, --end END | ending residue |
| -rosetta | write in rosetta 3.4 compatible format |
| -fasta FASTA | figure out trimming from given sequence |
| -rigid RIGID | use first and last rigid residue from .rigid file as written by pred2rigid |
| -traceback | print full traceback in case of error |
(renumber_rdc.py in.tab out.tab -s 5 -e 76
keep residue 5 to 76, start counting in output at 1
(renumber_rdc.py in.tab -fasta target.trim.fasta > out.tab
figure out correct trimming from target.trim.fasta, trim output, start counting at 1 for output file