renumber residues in chemical shift file
renumber_talos.py | [-h] [-s START] [-e END] |
[-fasta FASTA | -rigid RIGID] [-traceback] | |
infile [outfile] |
outfile | chemical shift file |
infile | chemical shift file |
-h, --help | show this help message and exit |
-s START, --start START | starting residue |
-e END, --end END | ending residue |
-fasta FASTA | figure out trimming from given sequence |
-rigid RIGID | use first and last rigid residue from .rigid file as written by pred2rigid |
-traceback | print full traceback in case of error |
(renumber_talos.py in.tab out.tab -s 5 -e 76
keep residue 5 to 76, start counting in output at 1
(renumber_talos.py in.tab -fasta target.trim.fasta > out.tab
figure out correct trimming from target.trim.fasta, trim output, start counting at 1 for output file