Submitted by olange on Mon, 05/07/2012 - 10:25
Description:
Installation of CS-Rosetta toolbox
Usage:
install.py |
[-h] [-notalos] [-nopicking] [-update] [-nocheck] |
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[-talos_dir TALOS_DIR] [-rosetta ROSETTA] |
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[-rosetta_database ROSETTA_DATABASE] [-blast BLAST] |
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[-vall VALL] [-platform {linux,mac}] [-build {default,mpi}] |
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[-genomes_db GENOMES_DB] [-blast_platform BLAST_PLATFORM] |
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[-target_lib TARGET_LIB] [-talos_version TALOS_VERSION] |
Detailed Help:
-h, --help |
show this help message and exit |
-notalos |
do not download NMRPipe (TALOS+) package |
-nopicking |
suppress installation of frag-picker, this takes a lot of space and is maybe not required (e.g., Laptop/Desktop installation vs. Mainframe installation) |
-update |
update genome and vall databases if updates available |
-nocheck |
do not check for availability of updates for genome and vall databases |
-talos_dir TALOS_DIR |
where to find an existing TALOS+ installation, use this if autodetection fails |
-rosetta ROSETTA |
path to an existing ROSETTA package |
-rosetta_database ROSETTA_DATABASE |
path to rosetta_database (only needed if not in same location as rosetta_source |
-blast BLAST |
specify path to pre-installed BLAST executable. If not given BLAST will be downloaded automatically |
-vall VALL |
specify path to pre-installed CS-Rosetta VALL |
-platform {linux,mac} |
specify the platform [linux,mac] |
-build {default,mpi} |
specify which executables from Rosetta to use [default,mpi] |
-genomes_db GENOMES_DB |
provide path to genome database, expect to find files nr.00.phd, nr.00.phi, etc. at this location |
-blast_platform BLAST_PLATFORM |
platform string to select appropriate blast executable when downloading |
-target_lib TARGET_LIB |
generate target entries at this path, if not absolute path this will be prefixed with $HOME |
-talos_version TALOS_VERSION |
force talos version (give the year: e.g., 2012 ) |