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References
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Author
any
Acton, Thomas B
Andre, Ingemar
Aramini, James M
Arrowsmith, Cheryl
Arrowsmith, Cheryl H
Bagaria, Anurag
Bah, Alaji
Baker, Susan L
Baker, David
Bax, Ad
Bonvin, Alexandre M J J
Bouvignies, Guillaume
Brereton, Andrew E.
Bryan, Philip N
Cavalli, Andrea
Correia, Bruno E
Dahlquist, Frederick W
Delaglio, Frank
DiMaio, Frank
Doreleijers, Jurgen F
Dotas, Rochelle R.
Eletsky, Alexander
Ertekin, Asli
Evangelidis, Thomas
Fitzkee, Nicholas C
Giachetti, Andrea
Guerry, Paul
Guntert, Peter
Gutmanas, Aleksandras
Hansen, Flemming D
He, Yanan
He, Yunfen
Herrmann, Torsten
Huang, Yuanpeng J
Huber, Thomas
Hunt, John F
Ignatchenko, Alexandr
Jaravine, Victor
Jonker, Hendrik R A
Karplus, Andrew
Kay, Lewis E
Kennedy, Michael A
Kuzin, Alexandre P
Lange, Oliver F.
Lange, Oliver
Lange, Oliver F
Lee, Hsiau-Wei
Lemak, Alexander
Liu, Gaohua
Ma, Li-Chung
Malliavin, Thérèse E
Mani, Rajeswari
Mao, Binchen
McShan, Andrew C.
Mills, Jeffrey L.
Montelione, Gaetano T
Nerli, Santrupti
Nilges, Michael
Nováček, Jiří
Orban, John
Otting, Gottfried
Pardi, Arthur
Porter, Justin
Prestegard, James
Raman, Srivatsan
Ramelot, Theresa A
Rosato, Antonio
Rossi, Paolo
Schmitz, Christophe
Schot, Gijs
Schwalbe, Harald
Sgourakis, Nikolaos G
Shen, Yang
Singarapu, Kiran K
Song, Yifan
Sousa, Marcelo C
Szyperski, Thomas
Szyperski, Thomas A
Tang, Yuefeng
Thompson, James
Tripsianes, Konstantinos
Tyka, Michael
Vallurupalli, Pramodh
Varga, Krisztina
Venditti, Vincenzo
Vendruscolo, Michele
Vernon, Robert
Vranken, Wim F
Vries, Sjoerd
Vuister, Geerten W
Wang, Xu
Warner, Lisa R
Wu, Bin
Wu, Yibing
Xiao, Rong
Yang, Yunhuang
Zhang, Zaiyong
Type
any
Book Chapter
Journal Article
Term
any
publication type - application
publication type - benchmark
publication type - method
Year
any
2019
2018
2014
2012
2011
2010
2009
2008
Keyword
any
CRYSTAL-STRUCTURE
NUCLEAR MAGNETIC-RESONANCE
PATTERN-RECOGNITION
X-RAY CRYSTALLOGRAPHY
Found 19 results
Author
Title
Type
[
Year
]
2019
[Nerli2019]
Nerli S
,
Sgourakis NG
. 2019.
CS-Rosetta
.
Biological NMR Part A, Methods in Enzymology. 614
2018
[Evangelidis2018]
Evangelidis T
,
Nerli S
,
Nováček J
,
Brereton AE
,
P. Karplus A
,
Dotas RR
,
Venditti V
,
Sgourakis NG
,
Tripsianes K
. 2018.
Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra
.
Nature Communications. 9
[Nerli2018]
Nerli S
,
McShan AC
,
Sgourakis NG
. 2018.
Chemical shift-based methods in NMR structure determination
.
Progress in Nuclear Magnetic Resonance Spectroscopy. 106-107
2014
[Lange2014]
Lange O
. 2014.
Automatic NOESY assignment in CS-RASREC-Rosetta
.
Journal of Biomolecular NMR. 59(3)
[Zhang2014]
Zhang Z
,
Porter J
,
Tripsianes K
,
Lange OF
. 2014.
Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta
.
Journal of Biomolecular NMR. 59(3)
2012
[Thompson2012]
Thompson J
,
Sgourakis NG
,
Liu G
,
Rossi P
,
Tang Y
,
Mills JL
,
Szyperski T
,
Montelione GT
,
Baker D
. 2012.
Accurate protein structure modeling using sparse NMR data and homologous structure information
.
Proceedings of the National Academy of Sciences. 109(25)
[Rosato2012a]
Rosato A
,
Aramini JM
,
Arrowsmith C
,
Bagaria A
,
Baker D
,
Cavalli A
,
Doreleijers JF
,
Eletsky A
,
Giachetti A
,
Guerry P
et al.
. 2012.
Blind testing of routine, fully automated determination of protein structures from NMR data.
.
Structure. 20(2):227-236.
[Lange2012b]
Lange OF
,
Rossi P
,
Sgourakis NG
,
Song Y
,
Lee H-W
,
Aramini JM
,
Ertekin A
,
Xiao R
,
Acton TB
,
Montelione GT
et al.
. 2012.
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
.
Proc Nat Am Soc. (in press)
[Schmitz2012a]
Schmitz C
,
Vernon R
,
Otting G
,
Baker D
,
Huber T
. 2012.
Protein structure determination from pseudocontact shifts using ROSETTA.
.
J Mol Biol. 416(5):668-677.
[Lange2012a]
Lange OF
,
Baker D
. 2012.
Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation.
.
Proteins. 80(3):884-895.
2011
[Sgourakis2011a]
Sgourakis NG
,
Lange OF
,
DiMaio F
,
Andre I
,
Fitzkee NC
,
Rossi P
,
Montelione GT
,
Bax A
,
Baker D
. 2011.
Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.
.
J. Am. Chem. Soc.. 133(16):6288-6298.
[Bouvignies2011a]
Bouvignies G
,
Vallurupalli P
,
Hansen FD
,
Correia BE
,
Lange OF
,
Bah A
,
Vernon R
,
Dahlquist FW
,
Baker D
,
Kay LE
. 2011.
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant.
.
Nature. 477(7362):111-114.
[Warner2011a]
Warner LR
,
Varga K
,
Lange OF
,
Baker SL
,
Baker D
,
Sousa MC
,
Pardi A
. 2011.
Structure of the BamC two-domain protein obtained by Rosetta with a limited NMR data set.
.
J Mol Biol. 411(1):83-95.
2010
[Raman2010b]
Raman S
,
Huang YJ
,
Mao B
,
Rossi P
,
Aramini JM
,
Liu G
,
Montelione GT
,
Baker D
. 2010.
Accurate Automated Protein NMR Structure Determination Using Unassigned NOESY Data
.
J. Am. Chem. Soc.. 132(1):202-207.
[shen2010a]
Shen Y
,
Bryan PN
,
He Y
,
Orban J
,
Baker D
,
Bax A
. 2010.
De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds.
.
Protein Sci.. 19(2):349-356.
[raman2010a]
Raman S
,
Lange OF
,
Rossi P
,
Tyka M
,
Wang X
,
Aramini JM
,
Liu G
,
Ramelot TA
,
Eletsky A
,
Szyperski T
et al.
. 2010.
NMR structure determination for larger proteins using backbone-only data.
.
Science. 327(5968):1014-1018.
2009
[shen2009a]
Shen Y
,
Vernon R
,
Baker D
,
Bax A
. 2009.
De novo protein structure generation from incomplete chemical shift assignments
.
J Biomol NMR. 43(2):63-78.
[Ramelot2009a]
Ramelot TA
,
Raman S
,
Kuzin AP
,
Xiao R
,
Ma L-C
,
Acton TB
,
Hunt JF
,
Montelione GT
,
Baker D
,
Kennedy MA
. 2009.
Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.
.
Proteins. 75(1):147-167.
2008
[shen2008a]
Shen Y
,
Lange OF
,
Delaglio F
,
Rossi P
,
Aramini JM
,
Liu G
,
Eletsky A
,
Wu Y
,
Singarapu KK
,
Lemak A
et al.
. 2008.
Consistent blind protein structure generation from NMR chemical shift data.
.
P. Natl. Acad. Sci. USA. 105(12):4685-4690.
Recent comments
This problem can arise when
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Tutorial: (Re-)Scoring of Structures is now updated
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quick install
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pick_fragments error
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homologuous sequences
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