For structure annotation, we have to run annotate_target and it shows us weak/strong of the structures. This tutorial explaints how to annotate structures calculated by abrelax or rasrec algorthm.
This tutorial shows how to run the standard CS-Rosetta protocol from Ref. [1] with the setup tools from the CS-Rosetta toolbox. This tutorial explains how to set up a basic calculation from backbone chemical shift data only.
An application that uses the abinitioprotocol and is, for example, started in the directory rosetta_demos/abinitio/ would read-out the following flags:
This chapter describes the basic CS-Rosetta protocol as described in Ref. [1]. In the literature variants of this protocol are often labeled CS-PCS-ROSETTA, CS-RDC-Rosetta, etc., which refers to combinations of the basic CS-Rosetta protocol with various types of experimental data[2][3].
Relax is the main protocol for simple all-atom refinement of structures in the ROSETTA force-field. Relax does not do extensive refinement and only searches the local conformational space around the starting structure.
