This page describes the flags that directly control the behavior of the AutoNOE module. Since AutoNOE module is built on top of RASREC module, it uses the same set of flags provided for RASREC (see here) and an additional set of flags given below:
Options that control how RASREC iterations interact with the AutoNOE module.
| -iterative::cenpool_noesy_cst_weight | weight to apply to centroid pool for noesy-autoassigned constraints |
| -iterative:skip_redundant_constraints | skip constranits that have similar constraints within 1=same residue 2=neighbours (0=inactive) |
| -iterative:delay_noesy_reassign | start reassigning NOE restraints after X structures have been generated |
| -iterative:initial_noe_auto_assign_csts | initial nopool assignment of NOESY data.... |
| -iterative:auto_assign_scheme | select CONST |
| -iterative:dcut | in ADAPT1 what dcut should be chosen |
| -iterative:limit_decoys_for_noe_assign | only use X first decoys for NOE assigment... |