Convert upper limit restraint file (upl) into rosetta format. Cyana output
final.upl usually contains ranking of restraints with SUP. it is advisable to
separate the certain assignments SUP=1 from the less certain ones. Use option
-low_qf for this purpose. If the target sequence is supplied (either in .fasta
format or in .seq format) it will be used to automatically work out the offset
from upl-numbering to the target sequence.
| upl2rosetta.py | [-h] [-low_qf LOW_QF] [-seq SEQ] [-fasta FASTA] |
| [-traceback] [-min_sep MIN_SEP] [-pad PAD] | |
| upl [cst] |
| cst | ROSETTA cst file |
| upl | CYANA upl file |
| -h, --help | show this help message and exit |
| -low_qf LOW_QF | write all restraints with SUP |
| -seq SEQ | sequence file to find offset and trimming |
| -fasta FASTA | fasta file to find offset and trimming |
| -traceback | print full traceback in case of error |
| -min_sep MIN_SEP | set N such that only restraints with i to i+N or more are written to output (default 4) |
| -pad PAD | pad upper distance bound by x (default 0.15) |
upl2rosetta.py final.upl highQF.cst -low_qf lowQF.cst -fasta t000_.fasta
parse final.upl and write restraints with SUP=1 into highQF.cst and restraints with SUP
upl2rosetta.py final.upl all.cst
convert all restraints from final.upl to rosetta format